Baked breakfast quesadillas are a tasty way to start your day! They’re filled with eggs, cheese, and your favorite veggies all tucked inside a warm tortilla. Yum!
I love making these for brunch because they’re super easy and everyone can add their own toppings. Plus, my kitchen smells amazing when they’re baking! 🥳
These quesadillas are perfect for busy mornings. You can prep them ahead of time, bake them, and enjoy a warm, cheesy breakfast in no time!
Key Ingredients & Substitutions
Flour Tortillas: Use large flour tortillas for the best folding. You can swap them for whole wheat or corn tortillas if you prefer. Just note that corn tortillas may be a bit more fragile.
Eggs: Large eggs give the filling a fluffy texture. If you’re vegan or looking to cut cholesterol, you can use a tofu scramble seasoned with turmeric for color.
Cheese: Cheddar is classic for its melting qualities. You could use a dairy-free cheese alternative or queso fresco for a different flavor. Mozzarella is also a great melt-in-your-mouth option!
Breakfast Sausage or Bacon: These are optional but add a nice protein boost. If you want a veggie version, consider sautéed mushrooms or extra veggies instead.
Bell Peppers and Onion: Feel free to mix up your veggies! Zucchini, spinach, or kale can work too. If you want more spice, consider adding jalapeños!
How Do I Ensure My Quesadillas Are Crispy and Cheesy?
The key to perfect quesadillas is in the baking method and assembly. Start with pre-heating your oven so it’s hot when the quesadillas go in. Make sure to give a good balance of egg filling and cheese, as cheese not only adds flavor but also holds everything together.
- Spread out the fillings evenly, leaving a little room at the edges for folding.
- Press the tortillas down a bit as you fold to prevent spillage.
- Let them bake until golden; this infuses a lovely crunch. Keeping an eye on them in the last few minutes helps!
After baking, let them cool slightly before cutting. This way, the cheesy goodness stays inside when you slice them!

Baked Breakfast Quesadillas
Ingredients You’ll Need:
- 4 large flour tortillas
- 6 large eggs
- 1/4 cup milk
- Salt and pepper, to taste
- 1 cup shredded cheddar cheese (or a blend of cheddar and Monterey Jack)
- 1/2 cup cooked breakfast sausage or bacon, chopped (optional)
- 1/2 cup diced bell peppers (red or green)
- 1/4 cup finely chopped onion
- 1 tbsp olive oil or butter
- Fresh cilantro, chopped (for garnish)
- Salsa, for serving
- Lime wedges, for serving
How Much Time Will You Need?
This delicious recipe only takes about 15 minutes of prep time and 10-12 minutes to bake, making it perfect for a quick and satisfying breakfast. So in just about 30 minutes, you can enjoy a hearty meal!
Step-by-Step Instructions:
1. Preparing the Oven:
First things first! Preheat your oven to 375°F (190°C). Next, lightly grease a baking sheet or line it with parchment paper so your quesadillas won’t stick.
2. Whisking the Eggs:
In a medium bowl, crack the eggs and add the milk. Sprinkle in some salt and pepper to taste, then whisk everything together until well combined. This will create a fluffy egg mixture!
3. Sautéing Vegetables:
Heat the olive oil or butter in a non-stick skillet over medium heat. Once hot, add the diced onions and bell peppers. Sauté them for about 3-4 minutes until they become soft and fragrant.
4. Cooking the Eggs:
Now, pour the egg mixture into the skillet with the sautéed vegetables. Gently stir and cook until the eggs are scrambled and just set. You want them cooked but still soft. Once done, remove from heat.
5. Filling the Tortillas:
Lay the tortillas flat on a clean surface. On one half of each tortilla, evenly distribute the scrambled egg mixture. Make sure to spread it out nicely for great flavor in every bite!
6. Adding Cheese and Meat (if using):
Sprinkle the cooked sausage or bacon over the eggs, if you’re using them. Then add a generous amount of shredded cheese on top!
7. Folding the Quesadillas:
Now, fold each tortilla in half to create a half-moon shape. Press down gently to help keep the filling inside. They are almost ready!
8. Baking Time:
Place the filled quesadillas on your prepared baking sheet. Bake them in the preheated oven for about 10-12 minutes. You want them to be golden, crispy, and the cheese all melted!
9. Final Touches:
Once out of the oven, let the quesadillas cool for a couple of minutes. Then, cut each one into wedges, making them easy to grab!
10. Serving:
Garnish your quesadillas with freshly chopped cilantro. Serve them warm with salsa and lime wedges on the side for that perfect kick!
Enjoy your warm, cheesy baked breakfast quesadillas! They are sure to brighten your morning!
Can I Use Different Types of Tortillas?
Absolutely! While flour tortillas work best for a soft and flexible quesadilla, you can use whole wheat or corn tortillas as well. Just remember that corn tortillas tend to be more fragile, so handle them with care.
How Do I Store Leftover Quesadillas?
Store any leftovers in an airtight container in the fridge for up to 3 days. To reheat, place them in a skillet over medium heat for a couple of minutes on each side or warm them in the microwave (just be aware they may lose their crispiness).
Can I Make These Ahead of Time?
Yes! You can prepare the filling a day in advance and store it in the fridge. Just assemble the quesadillas before baking them for a fresh, warm breakfast without morning hassle!
What Else Can I Add to the Filling?
Feel free to customize the filling with your favorite ingredients! Consider adding chopped spinach, diced tomatoes, or even some black beans for extra protein. Spices like cumin or chili powder can add extra flavor too!



